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B4galnt1 beta-1,4-N-acetyl-galactosaminyltransferase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103742903, updated on 11-Mar-2024

Summary

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Gene symbol
B4galnt1
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 1
See related
Ensembl:ENSNGAG00000010764
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See B4galnt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008347519.1 (343427..351868)

NW_008347519.1Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain 12B pseudogene Neighboring gene protein yippee-like 5 pseudogene Neighboring gene Solute carrier family 26 member 10 Neighboring gene Rho guanine nucleotide exchange factor 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008347519 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008347519.1 Reference S.galili_v1.0 Primary Assembly

    Range
    343427..351868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017800865.2 → XP_017656354.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6QSB4
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 381
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_008844050.3 → XP_008842272.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_008842272.1

    UniProtKB/TrEMBL
    A0A8C6QQJ9, A0A8C6QSB4
    Related
    ENSNGAP00000007542.1, ENSNGAT00000013028.1
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 429
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_008844051.3 → XP_008842273.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_008842273.1

    UniProtKB/TrEMBL
    A0A8C6QQJ9, A0A8C6QSB4
    Related
    ENSNGAP00000007548.1, ENSNGAT00000013034.1
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 429
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
Heading Accession and Version

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