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Cnot6l CCR4-NOT transcription complex subunit 6 like [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103742612, updated on 11-Mar-2024

Summary

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Gene symbol
Cnot6l
Gene description
CCR4-NOT transcription complex subunit 6 like
See related
Ensembl:ENSNGAG00000019803
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Cnot6l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008347189.1 (272605..379403, complement)

NW_008347189.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 subunit 3, X-linked pseudogene Neighboring gene C-X-C motif chemokine ligand 13 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene U2 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene Fraser extracellular matrix complex subunit 1 Neighboring gene trafficking protein particle complex subunit 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008347189 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008347189.1 Reference S.galili_v1.0 Primary Assembly

    Range
    272605..379403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008843688.3 → XP_008841910.1  CCR4-NOT transcription complex subunit 6-like isoform X2

    UniProtKB/TrEMBL
    A0A8C6RLW1, A0A8C6RP66
    Related
    ENSNGAP00000020248.1, ENSNGAT00000025917.1
    Conserved Domains (3) summary
    cd10312
    Location:186 → 533
    Deadenylase_CCR4b; C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like
    COG4886
    Location:52 → 178
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]

  2. XM_017800787.2 → XP_017656276.1  CCR4-NOT transcription complex subunit 6-like isoform X1

    UniProtKB/TrEMBL
    A0A8C6RLW1, A0A8C6RMJ1
    Related
    ENSNGAP00000020254.1, ENSNGAT00000025924.1
    Conserved Domains (3) summary
    cd10312
    Location:191 → 538
    Deadenylase_CCR4b; C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like
    COG4886
    Location:57 → 183
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:38 → 57
    LRR_1; leucine-rich repeat [structural motif]

  3. XM_029568591.1 → XP_029424451.1  CCR4-NOT transcription complex subunit 6-like isoform X2

    UniProtKB/TrEMBL
    A0A8C6RLW1, A0A8C6RP66
    Conserved Domains (3) summary
    cd10312
    Location:186 → 533
    Deadenylase_CCR4b; C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like
    COG4886
    Location:52 → 178
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
Nucleotide Protein
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