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Sec16a SEC16 homolog A, endoplasmic reticulum export factor [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103741212, updated on 11-Mar-2024

Summary

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Gene symbol
Sec16a
Gene description
SEC16 homolog A, endoplasmic reticulum export factor
See related
Ensembl:ENSNGAG00000011700
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Sec16a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008345746.1 (1123727..1160938, complement)

NW_008345746.1Genomic Context describing neighboring genes Neighboring gene peptidase, mitochondrial processing subunit alpha Neighboring gene inositol polyphosphate-5-phosphatase E Neighboring gene uncharacterized LOC115071855 Neighboring gene notch receptor 1 Neighboring gene EGF like domain multiple 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008345746 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008345746.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1123727..1160938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029567722.1 → XP_029423582.1  protein transport protein Sec16A isoform X1

    UniProtKB/TrEMBL
    A0A8C6QUM0
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  2. XM_008841966.2 → XP_008840188.1  protein transport protein Sec16A isoform X5

    UniProtKB/TrEMBL
    A0A8C6QUM0
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  3. XM_008841965.2 → XP_008840187.1  protein transport protein Sec16A isoform X4

    UniProtKB/TrEMBL
    A0A8C6QW72
    Related
    ENSNGAP00000008878.1, ENSNGAT00000014386.1
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  4. XM_008841963.2 → XP_008840185.1  protein transport protein Sec16A isoform X2

    UniProtKB/TrEMBL
    A0A8C6QUM0
    Related
    ENSNGAP00000008875.1, ENSNGAT00000014383.1
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  5. XM_008841964.2 → XP_008840186.1  protein transport protein Sec16A isoform X3

    UniProtKB/TrEMBL
    A0A8C6QW72
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  6. XM_008841962.2 → XP_008840184.1  protein transport protein Sec16A isoform X1

    UniProtKB/TrEMBL
    A0A8C6QUM0
    Conserved Domains (3) summary
    cd09233
    Location:1517 → 1879
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:1038 → 1253
    PRK10263; DNA translocase FtsK; Provisional

  7. XM_029567723.1 → XP_029423583.1  protein transport protein Sec16A isoform X6

    UniProtKB/TrEMBL
    A0A8C6QUM0
    Conserved Domains (4) summary
    cd09233
    Location:1288 → 1650
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    PHA03247
    Location:3 → 275
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:793 → 1024
    PRK10263; DNA translocase FtsK; Provisional
    pfam06070
    Location:681 → 890
    Herpes_UL32; Herpesvirus large structural phosphoprotein UL32

RNA

  1. XR_003850922.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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