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Ddx5 DEAD-box helicase 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103740926, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx5
Gene description
DEAD-box helicase 5
See related
Ensembl:ENSNGAG00000016241
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008345457.1 (31588..40068, complement)

NW_008345457.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase gamma 2, accessory subunit Neighboring gene U6 spliceosomal RNA Neighboring gene centrosomal protein 95 Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC115071807

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008345457 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008345457.1 Reference S.galili_v1.0 Primary Assembly

    Range
    31588..40068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008841605.3 → XP_008839827.1  probable ATP-dependent RNA helicase DDX5

    See identical proteins and their annotated locations for XP_008839827.1

    UniProtKB/TrEMBL
    A0A8C6R9S4
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:551 → 583
    P68HR; P68HR (NUC004) repeat

  2. XM_008841604.3 → XP_008839826.1  probable ATP-dependent RNA helicase DDX5

    See identical proteins and their annotated locations for XP_008839826.1

    UniProtKB/TrEMBL
    A0A8C6R9S4
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:551 → 583
    P68HR; P68HR (NUC004) repeat

  3. XM_017800250.2 → XP_017655739.1  probable ATP-dependent RNA helicase DDX5

    UniProtKB/TrEMBL
    A0A8C6R9S4
    Related
    ENSNGAP00000015126.1, ENSNGAT00000020727.1
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:551 → 583
    P68HR; P68HR (NUC004) repeat
Nucleotide Protein
Heading Accession and Version

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