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Pigm phosphatidylinositol glycan anchor biosynthesis class M [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103740234, updated on 11-Mar-2024

Summary

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Gene symbol
Pigm
Gene description
phosphatidylinositol glycan anchor biosynthesis class M
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Pigm in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008344599.1 (911938..914047)

NW_008344599.1Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 9 Neighboring gene potassium inwardly rectifying channel subfamily J member 10 Neighboring gene uncharacterized LOC115071661 Neighboring gene SLAM family member 9 Neighboring gene immunoglobulin superfamily member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008344599 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008344599.1 Reference S.galili_v1.0 Primary Assembly

    Range
    911938..914047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008840824.3 → XP_008839046.1  GPI mannosyltransferase 1

    Conserved Domains (1) summary
    pfam05007
    Location:140 → 408
    Mannosyl_trans; Mannosyltransferase (PIG-M)
Nucleotide Protein
Heading Accession and Version

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