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Polr1b RNA polymerase I subunit B [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103739891, updated on 11-Mar-2024

Summary

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Gene symbol
Polr1b
Gene description
RNA polymerase I subunit B
See related
Ensembl:ENSNGAG00000021472
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Polr1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008344179.1 (647135..685719)

NW_008344179.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115071584 Neighboring gene tubulin tyrosine ligase Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene 60S ribosomal protein L23a pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008344179 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA2
Names
polymerase (RNA) I polypeptide B, 128kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008344179.1 Reference S.galili_v1.0 Primary Assembly

    Range
    647135..685719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008840365.3 → XP_008838587.1  DNA-directed RNA polymerase I subunit RPA2

    UniProtKB/TrEMBL
    A0A8C6RQS8, A0A8C6WC10
    Related
    ENSNGAP00000022671.1, ENSNGAT00000028358.1
    Conserved Domains (3) summary
    cd00653
    Location:38 → 1133
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:563 → 616
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain
Nucleotide Protein
Heading Accession and Version

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