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Ddx1 DEAD-box helicase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103739395, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx1
Gene description
DEAD-box helicase 1
See related
Ensembl:ENSNGAG00000015783
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008343573.1 (1632019..1671351, complement)

NW_008343573.1Genomic Context describing neighboring genes Neighboring gene MYCN proto-oncogene, bHLH transcription factor Neighboring gene putative uncharacterized protein DDB_G0271982 Neighboring gene neuroblastoma-amplified sequence-like Neighboring gene profilin-1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008343573 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX1
Names
DEAD/H-box helicase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008343573.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1632019..1671351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029566812.1 → XP_029422672.1  ATP-dependent RNA helicase DDX1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6R8F4
    Related
    ENSNGAP00000014526.1, ENSNGAT00000020119.1
    Conserved Domains (4) summary
    COG0513
    Location:284 → 624
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12873
    Location:93 → 245
    SPRY_DDX1; SPRY domain associated with DEAD box gene DDX1
    cd17938
    Location:288 → 430
    DEADc_DDX1; DEAD-box helicase domain of DEAD box protein 1
    cl28899
    Location:4 → 62
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_008839772.2 → XP_008837994.1  ATP-dependent RNA helicase DDX1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6R8F4
    Conserved Domains (4) summary
    COG0513
    Location:284 → 624
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12873
    Location:93 → 245
    SPRY_DDX1; SPRY domain associated with DEAD box gene DDX1
    cd17938
    Location:288 → 430
    DEADc_DDX1; DEAD-box helicase domain of DEAD box protein 1
    cl28899
    Location:4 → 62
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

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