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Synj2 synaptojanin 2 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103739168, updated on 11-Mar-2024

Summary

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Gene symbol
Synj2
Gene description
synaptojanin 2
See related
Ensembl:ENSNGAG00000014859
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Synj2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008329624.1 (3027278..3132909)

NW_008329624.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene sorting nexin 9 Neighboring gene 40S ribosomal protein S3a pseudogene Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008329624 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008329624.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3027278..3132909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008839488.3 → XP_008837710.1  synaptojanin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8C6R3Z3
    Conserved Domains (3) summary
    COG5329
    Location:61 → 485
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:872 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:530 → 857
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_008839477.3 → XP_008837699.1  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C6R3Z3, A0A8C6R4M5
    Related
    ENSNGAP00000013354.1, ENSNGAT00000018933.1
    Conserved Domains (4) summary
    PHA03247
    Location:1185 → 1463
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:61 → 485
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:872 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:530 → 857
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_029566745.1 → XP_029422605.1  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C6R3Z3
    Conserved Domains (4) summary
    PHA03247
    Location:1132 → 1410
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:61 → 432
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:819 → 955
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:477 → 804
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  4. XM_029566744.1 → XP_029422604.1  synaptojanin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C6R3Z3
    Conserved Domains (4) summary
    PHA03247
    Location:1144 → 1422
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:20 → 444
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:831 → 967
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:489 → 816
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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