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Tnpo1 transportin 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103738459, updated on 11-Mar-2024

Summary

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Gene symbol
Tnpo1
Gene description
transportin 1
See related
Ensembl:ENSNGAG00000021263
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Tnpo1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008342399.1 (1804000..1897402, complement)

NW_008342399.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 171 Neighboring gene FCH and mu domain containing endocytic adaptor 2 Neighboring gene small integral membrane protein 15-like Neighboring gene mitochondrial pyruvate carrier 1 pseudogene Neighboring gene zinc finger protein 366 Neighboring gene histone H2B subacrosomal variant-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008342399 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transportin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008342399.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1804000..1897402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008838470.2 → XP_008836692.1  transportin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RQ42, A0A8C6RSI9
    Related
    ENSNGAP00000022380.1, ENSNGAT00000028065.1
    Conserved Domains (2) summary
    COG5215
    Location:32 → 767
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:103 → 124
    HEAT; HEAT repeat [structural motif]

  2. XM_029566142.1 → XP_029422002.1  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RQ42
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

  3. XM_029566145.1 → XP_029422005.1  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RQ42
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

  4. XM_029566143.1 → XP_029422003.1  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RQ42
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

  5. XM_029566144.1 → XP_029422004.1  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RQ42
    Related
    ENSNGAP00000022383.1, ENSNGAT00000028068.1
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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