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Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103738236, updated on 11-Mar-2024

Summary

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Gene symbol
Snrnp200
Gene description
small nuclear ribonucleoprotein U5 subunit 200
See related
Ensembl:ENSNGAG00000021993
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Snrnp200 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
45
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008329527.1 (909126..941902)

NW_008329527.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene non-SMC condensin I complex subunit H Neighboring gene ITPRIP like 1 Neighboring gene U12 minor spliceosomal RNA Neighboring gene cytosolic iron-sulfur assembly component 1 Neighboring gene transmembrane protein 127

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008329527 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 200 kDa helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008329527.1 Reference S.galili_v1.0 Primary Assembly

    Range
    909126..941902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008838112.2 → XP_008836334.1  U5 small nuclear ribonucleoprotein 200 kDa helicase

    UniProtKB/TrEMBL
    A0A8C6RSX6
    Related
    ENSNGAP00000023450.1, ENSNGAT00000029148.1
    Conserved Domains (5) summary
    smart00611
    Location:1809 → 2125
    SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
    COG1204
    Location:452 → 1241
    BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
    PRK00254
    Location:1310 → 1897
    PRK00254; ski2-like helicase; Provisional
    cd18021
    Location:1325 → 1515
    DEXHc_Brr2_2; C-terminal D[D/E]X[H/Q]-box helicase domain of spliceosomal Brr2 RNA helicase
    pfam18149
    Location:254 → 363
    Helicase_PWI; N-terminal helicase PWI domain
Nucleotide Protein
Heading Accession and Version

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