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Inpp5d inositol polyphosphate-5-phosphatase D [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103738235, updated on 11-Mar-2024

Summary

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Gene symbol
Inpp5d
Gene description
inositol polyphosphate-5-phosphatase D
See related
Ensembl:ENSNGAG00000015967
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Inpp5d in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008342297.1 (2759272..2880977)

NW_008342297.1Genomic Context describing neighboring genes Neighboring gene neuronal guanine nucleotide exchange factor Neighboring gene neuraminidase 2 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene autophagy related 16 like 1 Neighboring gene small Cajal body-specific RNA 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008342297 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008342297.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2759272..2880977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008838107.2 → XP_008836329.1  phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

    UniProtKB/TrEMBL
    A0A8C6W836
    Related
    ENSNGAP00000014845.1, ENSNGAT00000020442.1
    Conserved Domains (3) summary
    PTZ00449
    Location:938 → 1135
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd09100
    Location:406 → 712
    INPP5c_SHIP1-INPP5D; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and related proteins
    cd10343
    Location:4 → 105
    SH2_SHIP; Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)
Nucleotide Protein
Heading Accession and Version

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