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Armc9 armadillo repeat containing 9 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103738207, updated on 11-Mar-2024

Summary

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Gene symbol
Armc9
Gene description
armadillo repeat containing 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Armc9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008342297.1 (843907..1012987)

NW_008342297.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008342297 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lisH domain-containing protein ARMC9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008342297.1 Reference S.galili_v1.0 Primary Assembly

    Range
    843907..1012987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029565936.1 → XP_029421796.1  lisH domain-containing protein ARMC9 isoform X2

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  2. XM_029565932.1 → XP_029421792.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  3. XM_017799377.2 → XP_017654866.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  4. XM_029565934.1 → XP_029421794.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  5. XM_008838069.3 → XP_008836291.1  lisH domain-containing protein ARMC9 isoform X1

    See identical proteins and their annotated locations for XP_008836291.1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  6. XM_008838068.3 → XP_008836290.1  lisH domain-containing protein ARMC9 isoform X1

    See identical proteins and their annotated locations for XP_008836290.1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  7. XM_029565935.1 → XP_029421795.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  8. XM_029565933.1 → XP_029421793.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  9. XM_029565931.1 → XP_029421791.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  10. XM_008838067.3 → XP_008836289.1  lisH domain-containing protein ARMC9 isoform X1

    See identical proteins and their annotated locations for XP_008836289.1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif

  11. XM_029565930.1 → XP_029421790.1  lisH domain-containing protein ARMC9 isoform X1

    Conserved Domains (1) summary
    smart00667
    Location:7 → 38
    LisH; Lissencephaly type-1-like homology motif
Nucleotide Protein
Heading Accession and Version

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