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Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103737279, updated on 11-Mar-2024

Summary

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Gene symbol
Sgta
Gene description
small glutamine rich tetratricopeptide repeat co-chaperone alpha
See related
Ensembl:ENSNGAG00000014219
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Sgta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008341457.1 (2443931..2462208)

NW_008341457.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 like 3 Neighboring gene thimet oligopeptidase 1 Neighboring gene solute carrier family 39 member 3 Neighboring gene calmodulin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008341457 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small glutamine-rich tetratricopeptide repeat-containing protein alpha
Names
small glutamine rich tetratricopeptide repeat containing alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008341457.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2443931..2462208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029565403.1 → XP_029421263.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C6W6X5
    Conserved Domains (3) summary
    PLN03088
    Location:105 → 211
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:91 → 119
    TPR; TPR repeat [structural motif]
    pfam16546
    Location:5 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  2. XM_008837084.2 → XP_008835306.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    See identical proteins and their annotated locations for XP_008835306.1

    UniProtKB/TrEMBL
    A0A8C6W6X5
    Conserved Domains (3) summary
    PLN03088
    Location:105 → 211
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:91 → 119
    TPR; TPR repeat [structural motif]
    pfam16546
    Location:5 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  3. XM_029565404.1 → XP_029421264.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C6W6X5
    Conserved Domains (3) summary
    PLN03088
    Location:101 → 207
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:87 → 115
    TPR; TPR repeat [structural motif]
    pfam16546
    Location:5 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  4. XM_008837085.2 → XP_008835307.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    See identical proteins and their annotated locations for XP_008835307.1

    UniProtKB/TrEMBL
    A0A8C6W6X5
    Related
    ENSNGAP00000012347.1, ENSNGAT00000017905.1
    Conserved Domains (3) summary
    PLN03088
    Location:105 → 211
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:91 → 119
    TPR; TPR repeat [structural motif]
    pfam16546
    Location:5 → 64
    SGTA_dimer; Homodimerization domain of SGTA
Nucleotide Protein
Heading Accession and Version

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