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Kirrel3 kirre like nephrin family adhesion molecule 3 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103735354, updated on 11-Mar-2024

Summary

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Gene symbol
Kirrel3
Gene description
kirre like nephrin family adhesion molecule 3
See related
Ensembl:ENSNGAG00000022154
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Kirrel3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008329288.1 (650222..1234462)

NW_008329288.1Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P2 pseudogene Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008329288 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008329288.1 Reference S.galili_v1.0 Primary Assembly

    Range
    650222..1234462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008834600.2 → XP_008832822.1  kin of IRRE-like protein 3 isoform X4

    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 330
    Ig_2; Immunoglobulin domain
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  2. XM_008834586.2 → XP_008832808.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RWR4
    Related
    ENSNGAP00000023656.1, ENSNGAT00000029356.1
    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 330
    Ig_2; Immunoglobulin domain
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  3. XM_008834590.2 → XP_008832812.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RWB9
    Related
    ENSNGAP00000023663.1, ENSNGAT00000029363.1
    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 330
    Ig_2; Immunoglobulin domain
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  4. XM_008834596.3 → XP_008832818.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RVX0, A0A8C6WCH6
    Related
    ENSNGAP00000023659.1, ENSNGAT00000029359.1
    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 330
    Ig_2; Immunoglobulin domain
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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