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LOC103734487 N-acetyllactosaminide alpha-1,3-galactosyltransferase [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103734487, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103734487
Gene description
N-acetyllactosaminide alpha-1,3-galactosyltransferase
See related
Ensembl:ENSNGAG00000012204
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
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Genomic context

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See LOC103734487 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008338996.1 (989184..1063980)

NW_008338996.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase like 11 Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene DAB2 interacting protein Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 Neighboring gene stomatin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008338996 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008338996.1 Reference S.galili_v1.0 Primary Assembly

    Range
    989184..1063980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017798259.2 → XP_017653748.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Related
    ENSNGAP00000009546.1, ENSNGAT00000015061.1
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_029563698.1 → XP_029419558.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:38 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_017798258.2 → XP_017653747.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_008833449.3 → XP_008831671.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    See identical proteins and their annotated locations for XP_008831671.1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_029563695.1 → XP_029419555.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_029563696.1 → XP_029419556.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_029563697.1 → XP_029419557.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C6QVB6
    Conserved Domains (1) summary
    cl11394
    Location:51 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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