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Ddx50 DExD-box helicase 50 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103733755, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx50
Gene description
DExD-box helicase 50
See related
Ensembl:ENSNGAG00000004283
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx50 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008337625.1 (101340..148653, complement)

NW_008337625.1Genomic Context describing neighboring genes Neighboring gene DExD-box helicase 21 Neighboring gene uncharacterized LOC115070270 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene 40S ribosomal protein S19 pseudogene Neighboring gene small nucleolar RNA SNORA70 Neighboring gene storkhead box 1 Neighboring gene bestrophin-1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008337625 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX50
Names
DEAD-box helicase 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008337625.1 Reference S.galili_v1.0 Primary Assembly

    Range
    101340..148653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008832641.3 → XP_008830863.1  ATP-dependent RNA helicase DDX50 isoform X1

    UniProtKB/TrEMBL
    A0A8C6W301
    Related
    ENSNGAP00000003635.1, ENSNGAT00000005349.1
    Conserved Domains (3) summary
    COG0513
    Location:107 → 609
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:566 → 657
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:146 → 347
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

  2. XM_008832642.3 → XP_008830864.1  ATP-dependent RNA helicase DDX50 isoform X3

    Conserved Domains (3) summary
    COG0513
    Location:43 → 545
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:502 → 593
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:82 → 283
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

  3. XM_029563351.1 → XP_029419211.1  ATP-dependent RNA helicase DDX50 isoform X2

    Conserved Domains (3) summary
    COG0513
    Location:88 → 590
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:547 → 638
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:127 → 328
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50
Nucleotide Protein
Heading Accession and Version

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