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Ddx21 DExD-box helicase 21 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103733754, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx21
Gene description
DExD-box helicase 21
See related
Ensembl:ENSNGAG00000022273
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx21 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008337625.1 (72136..95433, complement)

NW_008337625.1Genomic Context describing neighboring genes Neighboring gene kinesin family binding protein Neighboring gene uncharacterized LOC115070270 Neighboring gene DExD-box helicase 50 Neighboring gene 60S ribosomal protein L36a-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008337625 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar RNA helicase 2
Names
DEAD-box helicase 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008337625.1 Reference S.galili_v1.0 Primary Assembly

    Range
    72136..95433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008832640.3 → XP_008830862.1  nucleolar RNA helicase 2

    UniProtKB/TrEMBL
    A0A8C6RWE7, A0A8C6WCD6
    Related
    ENSNGAP00000023844.1, ENSNGAT00000029547.1
    Conserved Domains (4) summary
    PLN02967
    Location:4 → 88
    PLN02967; kinase
    COG0513
    Location:179 → 588
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:618 → 710
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:198 → 399
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50
Nucleotide Protein
Heading Accession and Version

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