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Srrt serrate, RNA effector molecule [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103733501, updated on 11-Mar-2024

Summary

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Gene symbol
Srrt
Gene description
serrate, RNA effector molecule
See related
Ensembl:ENSNGAG00000023715
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Srrt in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008337205.1 (1766038..1779178, complement)

NW_008337205.1Genomic Context describing neighboring genes Neighboring gene acetylcholinesterase (Cartwright blood group) Neighboring gene UFM1 specific peptidase 1 Neighboring gene thyroid hormone receptor interactor 6 Neighboring gene solute carrier family 12 member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008337205 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in primary miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serrate RNA effector molecule homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008337205.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1766038..1779178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008832331.3 → XP_008830553.1  serrate RNA effector molecule homolog isoform X6

    See identical proteins and their annotated locations for XP_008830553.1

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 838
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  2. XM_008832328.3 → XP_008830550.1  serrate RNA effector molecule homolog isoform X4

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:643 → 844
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  3. XM_029563188.1 → XP_029419048.1  serrate RNA effector molecule homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 845
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  4. XM_008832324.3 → XP_008830546.1  serrate RNA effector molecule homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C6RYS9, A0A8C6S573
    Related
    ENSNGAP00000025919.1, ENSNGAT00000031643.1
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 849
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  5. XM_008832325.3 → XP_008830547.1  serrate RNA effector molecule homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:643 → 848
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  6. XM_008832330.3 → XP_008830552.1  serrate RNA effector molecule homolog isoform X6

    See identical proteins and their annotated locations for XP_008830552.1

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 838
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  7. XM_008832327.3 → XP_008830549.1  serrate RNA effector molecule homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 845
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  8. XM_008832329.3 → XP_008830551.1  serrate RNA effector molecule homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C6S573
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 842
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)

  9. XM_017797943.2 → XP_017653432.1  serrate RNA effector molecule homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C6RYS9, A0A8C6S573
    Related
    ENSNGAP00000025922.1, ENSNGAT00000031646.1
    Conserved Domains (2) summary
    pfam04959
    Location:644 → 849
    ARS2; Arsenite-resistance protein 2
    pfam12066
    Location:153 → 262
    DUF3546; Domain of unknown function (DUF3546)
Nucleotide Protein
Heading Accession and Version

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