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Mrm1 mitochondrial rRNA methyltransferase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103732614, updated on 11-Mar-2024

Summary

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Gene symbol
Mrm1
Gene description
mitochondrial rRNA methyltransferase 1
See related
Ensembl:ENSNGAG00000019175
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Mrm1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008329126.1 (418639..423974)

NW_008329126.1Genomic Context describing neighboring genes Neighboring gene gametogenetin binding protein 2 Neighboring gene U6 spliceosomal RNA Neighboring gene dehydrogenase/reductase 11 Neighboring gene uncharacterized LOC115070014 Neighboring gene uncharacterized LOC103732693

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008329126 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA methyltransferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008329126.1 Reference S.galili_v1.0 Primary Assembly

    Range
    418639..423974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008831239.3 → XP_008829461.1  rRNA methyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A8C6RLB8
    Related
    ENSNGAP00000019323.1, ENSNGAT00000024984.1
    Conserved Domains (2) summary
    cd18105
    Location:149 → 306
    SpoU-like_MRM1; SAM-dependent rRNA methylase related to MRM1
    pfam08032
    Location:90 → 130
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
Nucleotide Protein
Heading Accession and Version

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