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Ddx41 DEAD-box helicase 41 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103732372, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx41
Gene description
DEAD-box helicase 41
See related
Ensembl:ENSNGAG00000022111
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx41 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008336107.1 (673062..679327, complement)

NW_008336107.1Genomic Context describing neighboring genes Neighboring gene PDZ and LIM domain 7 Neighboring gene uncharacterized LOC108490713 Neighboring gene docking protein 3 Neighboring gene family with sequence similarity 193 member B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008336107 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008336107.1 Reference S.galili_v1.0 Primary Assembly

    Range
    673062..679327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029562440.1 → XP_029418300.1  probable ATP-dependent RNA helicase DDX41 isoform X1

    Conserved Domains (1) summary
    cd17951
    Location:192 → 397
    DEADc_DDX41; DEAD-box helicase domain of DEAD box protein 41

  2. XM_008830949.1 → XP_008829171.1  probable ATP-dependent RNA helicase DDX41 isoform X2

    UniProtKB/TrEMBL
    A0A8C6WC96
    Related
    ENSNGAP00000023609.1, ENSNGAT00000029309.1
    Conserved Domains (2) summary
    COG0513
    Location:153 → 566
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17951
    Location:192 → 397
    DEADc_DDX41; DEAD-box helicase domain of DEAD box protein 41

  3. XM_008830950.3 → XP_008829172.1  probable ATP-dependent RNA helicase DDX41 isoform X3

    Conserved Domains (2) summary
    cd17951
    Location:192 → 397
    DEADc_DDX41; DEAD-box helicase domain of DEAD box protein 41
    cl38915
    Location:408 → 486
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
Nucleotide Protein
Heading Accession and Version

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