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Bicc1 BicC family RNA binding protein 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730740, updated on 11-Mar-2024

Summary

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Gene symbol
Bicc1
Gene description
BicC family RNA binding protein 1
See related
Ensembl:ENSNGAG00000023605
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Bicc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008334056.1 (851357..1131736, complement)

NW_008334056.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like 1 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP3-like Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene transcription factor A, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008334056 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bicaudal C homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008334056.1 Reference S.galili_v1.0 Primary Assembly

    Range
    851357..1131736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017797134.2 → XP_017652623.1  protein bicaudal C homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C6RY05, A0A8C6WDA6
    Related
    ENSNGAP00000025767.1, ENSNGAT00000031488.1
    Conserved Domains (3) summary
    cd09520
    Location:871 → 935
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:133 → 199
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:335 → 414
    KH_10; GLD-3 KH domain 5

  2. XM_029561567.1 → XP_029417427.1  protein bicaudal C homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6WDA6
    Conserved Domains (3) summary
    cd09520
    Location:927 → 991
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:190 → 256
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:392 → 471
    KH_10; GLD-3 KH domain 5

  3. XM_029561566.1 → XP_029417426.1  protein bicaudal C homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6WDA6
    Conserved Domains (3) summary
    cd09520
    Location:928 → 992
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:190 → 256
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:392 → 471
    KH_10; GLD-3 KH domain 5

  4. XM_029561570.1 → XP_029417430.1  protein bicaudal C homolog 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C6WDA6
    Conserved Domains (4) summary
    cd09520
    Location:792 → 856
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:54 → 120
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:256 → 335
    KH_10; GLD-3 KH domain 5
    cl00098
    Location:1 → 43
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

  5. XM_029561569.1 → XP_029417429.1  protein bicaudal C homolog 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C6WDA6, A0A8C6WDH7
    Related
    ENSNGAP00000025771.1, ENSNGAT00000031492.1
    Conserved Domains (3) summary
    cd09520
    Location:871 → 930
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:133 → 199
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:335 → 414
    KH_10; GLD-3 KH domain 5

  6. XM_029561568.1 → XP_029417428.1  protein bicaudal C homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6WDA6
    Conserved Domains (3) summary
    cd09520
    Location:928 → 987
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    cd02394
    Location:190 → 256
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    pfam17905
    Location:392 → 471
    KH_10; GLD-3 KH domain 5
Nucleotide Protein
Heading Accession and Version

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