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Xpot exportin for tRNA [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730719, updated on 11-Mar-2024

Summary

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Gene symbol
Xpot
Gene description
exportin for tRNA
See related
Ensembl:ENSNGAG00000020615
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Xpot in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008328707.1 (402860..451201)

NW_008328707.1Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 1 Neighboring gene KICSTOR subunit 2 Neighboring gene chromosome unknown C12orf56 homolog Neighboring gene translation machinery-associated protein 7-like Neighboring gene small nucleolar RNA SNORA3/SNORA45 family Neighboring gene TANK binding kinase 1 Neighboring gene NPC intracellular cholesterol transporter 2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008328707 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-T

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008328707.1 Reference S.galili_v1.0 Primary Assembly

    Range
    402860..451201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008828987.3 → XP_008827209.1  exportin-T isoform X1

    UniProtKB/TrEMBL
    A0A8C6RMZ8
    Conserved Domains (2) summary
    smart00913
    Location:21 → 88
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  2. XM_029561502.1 → XP_029417362.1  exportin-T isoform X2

    UniProtKB/TrEMBL
    A0A8C6RMZ8
    Conserved Domains (2) summary
    smart00913
    Location:21 → 88
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  3. XM_029561501.1 → XP_029417361.1  exportin-T isoform X1

    UniProtKB/TrEMBL
    A0A8C6RMZ8
    Related
    ENSNGAP00000021471.1, ENSNGAT00000027151.1
    Conserved Domains (2) summary
    smart00913
    Location:21 → 88
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  4. XM_029561503.1 → XP_029417363.1  exportin-T isoform X3

    UniProtKB/TrEMBL
    A0A8C6RMZ8
    Conserved Domains (1) summary
    pfam08389
    Location:10 → 157
    Xpo1; Exportin 1-like protein
Nucleotide Protein
Heading Accession and Version

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