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Hs2st1 heparan sulfate 2-O-sulfotransferase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730111, updated on 11-Mar-2024

Summary

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Gene symbol
Hs2st1
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSNGAG00000021248
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Hs2st1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008333469.1 (2231256..2269579, complement)

NW_008333469.1Genomic Context describing neighboring genes Neighboring gene LIM domain only 4 Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008333469 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008333469.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2231256..2269579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008828296.2 → XP_008826518.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RSN9
    Related
    ENSNGAP00000022340.1, ENSNGAT00000028025.1
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 326
    Sulfotransfer_2; Sulfotransferase family

  2. XM_017796956.1 → XP_017652445.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RSN9
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 327
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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Gene LinkOut

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