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Celf3 CUGBP Elav-like family member 3 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730059, updated on 11-Mar-2024

Summary

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Gene symbol
Celf3
Gene description
CUGBP Elav-like family member 3
See related
Ensembl:ENSNGAG00000021612
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Celf3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008333404.1 (657012..671119)

NW_008333404.1Genomic Context describing neighboring genes Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene cysteine-rich protein 1 pseudogene Neighboring gene sorting nexin 27 Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA2/SNORA34 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008333404 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008333404.1 Reference S.galili_v1.0 Primary Assembly

    Range
    657012..671119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029561164.1 → XP_029417024.1  CUGBP Elav-like family member 3 isoform X5

    UniProtKB/TrEMBL
    A0A8C6RUD3
    Conserved Domains (3) summary
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:304 → 382
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 389
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  2. XM_008828211.1 → XP_008826433.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A8C6RUD3
    Related
    ENSNGAP00000022893.1, ENSNGAT00000028582.1
    Conserved Domains (3) summary
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:303 → 381
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 388
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  3. XM_008828206.3 → XP_008826428.1  CUGBP Elav-like family member 3 isoform X1

    See identical proteins and their annotated locations for XP_008826428.1

    UniProtKB/TrEMBL
    A0A8C6WC49
    Related
    ENSNGAP00000022891.1, ENSNGAT00000028580.1
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 351
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:380 → 458
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  4. XM_008828205.2 → XP_008826427.1  CUGBP Elav-like family member 3 isoform X1

    See identical proteins and their annotated locations for XP_008826427.1

    UniProtKB/TrEMBL
    A0A8C6WC49
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 351
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:380 → 458
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  5. XM_008828207.1 → XP_008826429.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C6WBY1, A0A8C6WC49
    Related
    ENSNGAP00000022889.1, ENSNGAT00000028578.1
    Conserved Domains (4) summary
    PRK12323
    Location:213 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:379 → 457
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  6. XM_017796929.1 → XP_017652418.1  CUGBP Elav-like family member 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C6WC49
    Conserved Domains (4) summary
    PRK10263
    Location:208 → 345
    PRK10263; DNA translocase FtsK; Provisional
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:379 → 457
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  7. XM_008828210.3 → XP_008826432.1  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C6RUD3
    Conserved Domains (3) summary
    cd12635
    Location:31 → 111
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:317 → 395
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:34 → 402
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RNA

  1. XR_607087.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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