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Extl3 exostosin like glycosyltransferase 3 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103729989, updated on 11-Mar-2024

Summary

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Gene symbol
Extl3
Gene description
exostosin like glycosyltransferase 3
See related
Ensembl:ENSNGAG00000020413
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Extl3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008333388.1 (2490881..2598993, complement)

NW_008333388.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene homeobox containing 1 Neighboring gene molybdopterin synthase catalytic subunit-like Neighboring gene integrator complex subunit 9 Neighboring gene G-protein-signaling modulator 3 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene frizzled class receptor 3 Neighboring gene F-box protein 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008333388 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008333388.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2490881..2598993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029561121.1 → XP_029416981.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8C6RR55
    Conserved Domains (3) summary
    pfam03016
    Location:190 → 500
    Exostosin; Exostosin family
    pfam07926
    Location:76 → 150
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    pfam09258
    Location:663 → 900
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_008828122.3 → XP_008826344.1  exostosin-like 3

    See identical proteins and their annotated locations for XP_008826344.1

    UniProtKB/TrEMBL
    A0A8C6RR55
    Related
    ENSNGAP00000021136.1, ENSNGAT00000026812.1
    Conserved Domains (3) summary
    pfam03016
    Location:190 → 500
    Exostosin; Exostosin family
    pfam07926
    Location:76 → 150
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    pfam09258
    Location:663 → 900
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_008828123.3 → XP_008826345.1  exostosin-like 3

    See identical proteins and their annotated locations for XP_008826345.1

    UniProtKB/TrEMBL
    A0A8C6RR55
    Conserved Domains (3) summary
    pfam03016
    Location:190 → 500
    Exostosin; Exostosin family
    pfam07926
    Location:76 → 150
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    pfam09258
    Location:663 → 900
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_029561120.1 → XP_029416980.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8C6RR55
    Conserved Domains (3) summary
    pfam03016
    Location:190 → 500
    Exostosin; Exostosin family
    pfam07926
    Location:76 → 150
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    pfam09258
    Location:663 → 900
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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