U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sec23ip SEC23 interacting protein [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103729276, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Sec23ip
Gene description
SEC23 interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Sec23ip in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008332149.1 (3968916..4024840, complement)

NW_008332149.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S17-like Neighboring gene vacuolar ATPase assembly integral membrane protein Vma21 pseudogene Neighboring gene minichromosome maintenance complex binding protein Neighboring gene inositol polyphosphate-5-phosphatase F

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008332149 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SEC23-interacting protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008332149.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3968916..4024840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008827296.3 → XP_008825518.1  SEC23-interacting protein isoform X3

    Conserved Domains (4) summary
    cd09584
    Location:633 → 701
    SAM_sec23ip; SAM domain of sec23ip
    PHA03247
    Location:65 → 256
    PHA03247; large tegument protein UL36; Provisional
    pfam02825
    Location:268 → 339
    WWE; WWE domain
    pfam02862
    Location:778 → 984
    DDHD; DDHD domain

  2. XM_008827295.3 → XP_008825517.1  SEC23-interacting protein isoform X2

    Conserved Domains (4) summary
    cd09584
    Location:634 → 702
    SAM_sec23ip; SAM domain of sec23ip
    PHA03247
    Location:66 → 257
    PHA03247; large tegument protein UL36; Provisional
    pfam02825
    Location:269 → 340
    WWE; WWE domain
    pfam02862
    Location:779 → 984
    DDHD; DDHD domain

  3. XM_017796687.2 → XP_017652176.1  SEC23-interacting protein isoform X4

    Conserved Domains (4) summary
    cd09584
    Location:603 → 671
    SAM_sec23ip; SAM domain of sec23ip
    PHA03247
    Location:66 → 238
    PHA03247; large tegument protein UL36; Provisional
    pfam02825
    Location:238 → 309
    WWE; WWE domain
    pfam02862
    Location:748 → 954
    DDHD; DDHD domain

  4. XM_008827294.3 → XP_008825516.1  SEC23-interacting protein isoform X1

    Conserved Domains (4) summary
    cd09584
    Location:634 → 702
    SAM_sec23ip; SAM domain of sec23ip
    PHA03247
    Location:66 → 257
    PHA03247; large tegument protein UL36; Provisional
    pfam02825
    Location:269 → 340
    WWE; WWE domain
    pfam02862
    Location:779 → 985
    DDHD; DDHD domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.