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LOC103728922 beta-1,3-galactosyltransferase 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103728922, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103728922
Gene description
beta-1,3-galactosyltransferase 5
See related
Ensembl:ENSNGAG00000004051
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
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Genomic context

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See LOC103728922 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008331810.1 (1691131..1693987)

NW_008331810.1Genomic Context describing neighboring genes Neighboring gene SH3 domain-binding glutamic acid-rich protein Neighboring gene U6 spliceosomal RNA Neighboring gene beta-1,3-galactosyltransferase 5-like Neighboring gene beta-1,3-galactosyltransferase 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008331810 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008331810.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1691131..1693987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008826919.1 → XP_008825141.1  beta-1,3-galactosyltransferase 5

    UniProtKB/TrEMBL
    A0A8C6QHQ6
    Related
    ENSNGAP00000003490.1, ENSNGAT00000005057.1
    Conserved Domains (1) summary
    cl21608
    Location:69 → 259
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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