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Smarca1 SNF2 related chromatin remodeling ATPase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103728745, updated on 20-Sep-2024

Summary

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Gene symbol
Smarca1
Gene description
SNF2 related chromatin remodeling ATPase 1
See related
Ensembl:ENSNGAG00000006492
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Smarca1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008331606.1 (549254..640180, complement)

NW_008331606.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene OCRL inositol polyphosphate-5-phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008331606 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L1
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008331606.1 Reference S.galili_v1.0 Primary Assembly

    Range
    549254..640180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008826703.2 → XP_008824925.1  probable global transcription activator SNF2L1 isoform X5

    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1057
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  2. XM_008826701.2 → XP_008824923.1  probable global transcription activator SNF2L1 isoform X3

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1062
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  3. XM_008826704.2 → XP_008824926.1  probable global transcription activator SNF2L1 isoform X8

    UniProtKB/TrEMBL
    A0A8C6W3J6
    Related
    ENSNGAP00000004823.1, ENSNGAT00000008081.1
    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1039
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  4. XM_008826700.2 → XP_008824922.1  probable global transcription activator SNF2L1 isoform X2

    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1069
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  5. XM_017796518.2 → XP_017652007.1  probable global transcription activator SNF2L1 isoform X6

    UniProtKB/TrEMBL
    A0A8C6QL54
    Related
    ENSNGAP00000004834.1, ENSNGAT00000008099.1
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1046
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  6. XM_029560408.1 → XP_029416268.1  probable global transcription activator SNF2L1 isoform X8

    UniProtKB/TrEMBL
    A0A8C6W3J6
    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1039
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  7. XM_008826699.3 → XP_008824921.1  probable global transcription activator SNF2L1 isoform X1

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1074
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  8. XM_029560407.1 → XP_029416267.1  probable global transcription activator SNF2L1 isoform X7

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1051
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  9. XM_029560406.1 → XP_029416266.1  probable global transcription activator SNF2L1 isoform X4

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1051
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  10. XM_017796517.2 → XP_017652006.1  probable global transcription activator SNF2L1 isoform X4

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1051
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  11. XM_029560409.1 → XP_029416269.1  probable global transcription activator SNF2L1 isoform X8

    UniProtKB/TrEMBL
    A0A8C6W3J6
    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1039
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  12. XM_029560410.1 → XP_029416270.1  probable global transcription activator SNF2L1 isoform X9

    Conserved Domains (1) summary
    PLN03142
    Location:74 → 1020
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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