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LOC103728008 torsin-1A-interacting protein 2 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103728008, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103728008
Gene description
torsin-1A-interacting protein 2
See related
Ensembl:ENSNGAG00000010844
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
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Genomic context

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See LOC103728008 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008360330.1 (6396467..6430830, complement)

NW_008360330.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene family with sequence similarity 163 member A Neighboring gene uncharacterized LOC115068974 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene torsin 1A interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008360330 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008360330.1 Reference S.galili_v1.0 Primary Assembly

    Range
    6396467..6430830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029560217.1 → XP_029416077.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C6QQS3
    Conserved Domains (1) summary
    pfam05609
    Location:15 → 469
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_029560216.1 → XP_029416076.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C6QQS3
    Related
    ENSNGAP00000007633.1, ENSNGAT00000013121.1
    Conserved Domains (1) summary
    pfam05609
    Location:15 → 469
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_008826144.3 → XP_008824366.1  torsin-1A-interacting protein 2

    UniProtKB/TrEMBL
    A0A8C6QQS3
    Conserved Domains (1) summary
    pfam05609
    Location:15 → 469
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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