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Ddx6 DEAD-box helicase 6 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103727875, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx6
Gene description
DEAD-box helicase 6
See related
Ensembl:ENSNGAG00000016848
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008360328.1 (67307..108250, complement)

NW_008360328.1Genomic Context describing neighboring genes Neighboring gene trehalase Neighboring gene SNRPN upstream reading frame protein-like Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene small nucleolar RNA SNORA33 Neighboring gene C-X-C motif chemokine receptor 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008360328 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008360328.1 Reference S.galili_v1.0 Primary Assembly

    Range
    67307..108250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008825941.3 → XP_008824163.1  probable ATP-dependent RNA helicase DDX6

    See identical proteins and their annotated locations for XP_008824163.1

    UniProtKB/TrEMBL
    A0A8C6RD17
    Related
    ENSNGAP00000015970.1, ENSNGAT00000021582.1
    Conserved Domains (2) summary
    cd18787
    Location:308 → 437
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:97 → 298
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  2. XM_008825940.3 → XP_008824162.1  probable ATP-dependent RNA helicase DDX6

    See identical proteins and their annotated locations for XP_008824162.1

    UniProtKB/TrEMBL
    A0A8C6RD17
    Conserved Domains (2) summary
    cd18787
    Location:308 → 437
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:97 → 298
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  3. XM_008825939.3 → XP_008824161.1  probable ATP-dependent RNA helicase DDX6

    See identical proteins and their annotated locations for XP_008824161.1

    UniProtKB/TrEMBL
    A0A8C6RD17
    Conserved Domains (2) summary
    cd18787
    Location:308 → 437
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:97 → 298
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  4. XM_029560115.1 → XP_029415975.1  probable ATP-dependent RNA helicase DDX6

    UniProtKB/TrEMBL
    A0A8C6RD17
    Conserved Domains (2) summary
    cd18787
    Location:308 → 437
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:97 → 298
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6

  5. XM_029560116.1 → XP_029415976.1  probable ATP-dependent RNA helicase DDX6

    UniProtKB/TrEMBL
    A0A8C6RD17
    Conserved Domains (2) summary
    cd18787
    Location:308 → 437
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17940
    Location:97 → 298
    DEADc_DDX6; DEAD-box helicase domain of DEAD box protein 6
Nucleotide Protein
Heading Accession and Version

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