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LOC103725684 ATP-dependent RNA helicase DDX19A [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103725684, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103725684
Gene description
ATP-dependent RNA helicase DDX19A
See related
Ensembl:ENSNGAG00000019362
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
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Genomic context

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See LOC103725684 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008359441.1 (3463485..3491466)

NW_008359441.1Genomic Context describing neighboring genes Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene DEAD-box helicase 19B Neighboring gene U2 spliceosomal RNA Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2 Neighboring gene uncharacterized LOC115068404 Neighboring gene 40S ribosomal protein S11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008359441 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX19A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008359441.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3463485..3491466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008822981.3 → XP_008821203.2  ATP-dependent RNA helicase DDX19A isoform X1

    Conserved Domains (2) summary
    cd18787
    Location:367 → 503
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cl28899
    Location:135 → 363
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_008822980.3 → XP_008821202.1  ATP-dependent RNA helicase DDX19A isoform X2

    UniProtKB/TrEMBL
    A0A8C6RLW5
    Related
    ENSNGAP00000019599.1, ENSNGAT00000025261.1
    Conserved Domains (2) summary
    cd18787
    Location:306 → 442
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cl28899
    Location:74 → 302
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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