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Ddx39b DExD-box helicase 39B [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103724455, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx39b
Gene description
DExD-box helicase 39B
See related
Ensembl:ENSNGAG00000022948
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx39b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008358192.1 (779376..792670)

NW_008358192.1Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor like 1 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene uncharacterized LOC108490119 Neighboring gene patr class I histocompatibility antigen, A-126 alpha chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008358192 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome RNA helicase DDX39B
Names
DEAD-box helicase 39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008358192.1 Reference S.galili_v1.0 Primary Assembly

    Range
    779376..792670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008821551.3 → XP_008819773.1  spliceosome RNA helicase DDX39B isoform X1

    See identical proteins and their annotated locations for XP_008819773.1

    UniProtKB/TrEMBL
    A0A8C6RVS3, A0A8C6WCU7
    Related
    ENSNGAP00000024807.1, ENSNGAT00000030519.1
    Conserved Domains (2) summary
    cd18787
    Location:262 → 391
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17950
    Location:44 → 251
    DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

  2. XM_029557875.1 → XP_029413735.1  spliceosome RNA helicase DDX39B isoform X2

    Conserved Domains (2) summary
    cd18787
    Location:180 → 309
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17950
    Location:1 → 169
    DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
Nucleotide Protein
Heading Accession and Version

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