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LOC103690065 thrombopoietin [ Rattus norvegicus (Norway rat) ]

Gene ID: 103690065, discontinued on 26-Mar-2024
  • This record was withdrawn by the Rat Genome Database (RGD).

Summary

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Symbol
LOC103690065provided by RGD
Full Name
thrombopoietinprovided by RGD
Primary source
RGD:9417534
Gene type
protein coding
RefSeq status
WITHDRAWN
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
DISCONTINUED: This record was withdrawn by the Rat Genome Database (RGD).
Annotation information
Note: LOC103690065 appears to be a duplicate placement of Thpo (GeneID: 81811) on Rnor_6.0 (Annot. Release 105) that is absent from Rn_Celera and is not supported by syntenic regions in mouse and human. Additionally, the annotation of nearby genes at this location including LOC100912534, LOC100912455, LOC100912498 and LOC100912571, all located on underlying component AABR07034658.1, also lack support by syntenic regions in mouse and human and annotation on Rn_Celera. 2-sequence BLAST of LOC103690065 underlying component AABR07034658.1 against Thpo underlying components AABR07072260.1 and AC110855.6 shows high sequence identity (100%). BLAST analysis of LOC103690065 underlying component AABR07034658.1 against the rat genome shows high sequence identity with NC_005110.4 (100% across ~48 kb) corresponding to the region on which Thpo is annotated. This data suggests that LOC103690065 is a duplicate placement and the placement of AABR07034658.1 here is an assembly error. [17 Mar 2015]
Expression
Biased expression in Kidney (RPKM 27.6), Liver (RPKM 23.2) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 11

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
thrombopoietin

Gene LinkOut

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Research Materials