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DDX39A DExD-box helicase 39A [ Ursus maritimus (polar bear) ]

Gene ID: 103682110, updated on 11-Mar-2024

Summary

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Gene symbol
DDX39A
Gene description
DExD-box helicase 39A
See related
Ensembl:ENSUMAG00000004317
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DDX39A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423786.1 (47547148..47555545)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007928802.1 (693728..702054)

NW_024423786.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E receptor 1 Neighboring gene protein kinase N1 Neighboring gene uncharacterized LOC121102529 Neighboring gene adhesion G protein-coupled receptor E5 Neighboring gene uncharacterized LOC121102531 Neighboring gene uncharacterized LOC103682120

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX39A
Names
DEAD-box helicase 39A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423786.1 Reference ASM1731132v1 Primary Assembly

    Range
    47547148..47555545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040629185.1 → XP_040485119.1  ATP-dependent RNA helicase DDX39A isoform X1

    UniProtKB/TrEMBL
    A0A452TBZ9, A0A8M1FY26
    Conserved Domains (2) summary
    cd18787
    Location:321 → 450
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17950
    Location:85 → 310
    DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

  2. XM_008711697.2 → XP_008709919.1  ATP-dependent RNA helicase DDX39A isoform X2

    UniProtKB/TrEMBL
    A0A384DT24, A0A452TBZ9
    Related
    ENSUMAP00000005450.1
    Conserved Domains (3) summary
    PTZ00424
    Location:61 → 459
    PTZ00424; helicase 45; Provisional
    cd00079
    Location:305 → 431
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:88 → 291
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
Heading Accession and Version

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