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SRY sex determining region Y [ Ursus maritimus (polar bear) ]

Gene ID: 103680433, updated on 11-Mar-2024

Summary

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Gene symbol
SRY
Gene description
sex determining region Y
See related
Ensembl:ENSUMAG00000024805
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human all
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Genomic context

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See SRY in Genome Data Viewer
Location:
chromosome: Y
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Y Unlocalized Scaffold NW_024423325.1 (3303..3983)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007925176.1 (3318..3983)

NW_024423325.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unequal rates of Y chromosome gene divergence during speciation of the family Ursidae. Nakagome S, et al. Mol Biol Evol, 2008 Jul. PMID 18400788
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in male sex determination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sex-determining region Y protein
Names
sex determinig region Y
sex determining Y protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423325.1 Reference ASM1731132v1 Primary Assembly

    Range
    3303..3983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008709959.2 → XP_008708181.1  sex-determining region Y protein

    See identical proteins and their annotated locations for XP_008708181.1

    UniProtKB/TrEMBL
    A9J3X8
    Related
    ENSUMAP00000034465.1
    Conserved Domains (2) summary
    cd01388
    Location:53 → 124
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12336
    Location:123 → 194
    SOXp; SOX transcription factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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