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CRY1 cryptochrome circadian regulator 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103676459, updated on 11-Mar-2024

Summary

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Gene symbol
CRY1
Gene description
cryptochrome circadian regulator 1
See related
Ensembl:ENSUMAG00000017250
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See CRY1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424564.1 (41677626..41776123, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907256.1 (6158390..6256743)

NW_024424564.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103676465 Neighboring gene transmembrane protein 263 Neighboring gene 5S ribosomal RNA Neighboring gene mitochondrial transcription termination factor 2 Neighboring gene uncharacterized LOC121104365 Neighboring gene ankyrin repeat and BTB domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cryptochrome 1 in Retinal Cone Photoreceptors Suggests a Novel Functional Role in Mammals. Nießner C, et al. Sci Rep, 2016 Feb 22. PMID 26898837, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cryptochrome 1 in retinal cone photoreceptors suggests a novel functional role in mammals.
    Title: Cryptochrome 1 in Retinal Cone Photoreceptors Suggests a Novel Functional Role in Mammals.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cryptochrome-1
Names
cryptochrome circadian clock 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424564.1 Reference ASM1731132v1 Primary Assembly

    Range
    41677626..41776123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008705647.2 → XP_008703869.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    A0A384DAP9
    Related
    ENSUMAP00000023734.1
    Conserved Domains (2) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam03441
    Location:288 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase

  2. XM_008705646.2 → XP_008703868.1  cryptochrome-1 isoform X1

    UniProtKB/TrEMBL
    A0A384DA11
    Related
    ENSUMAP00000023728.1
    Conserved Domains (2) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam03441
    Location:288 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase
Nucleotide Protein
Heading Accession and Version

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