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HPSE2 heparanase 2 (inactive) [ Ursus maritimus (polar bear) ]

Gene ID: 103675767, updated on 11-Mar-2024

Summary

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Gene symbol
HPSE2
Gene description
heparanase 2 (inactive)
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See HPSE2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426885.1 (28719590..29353801)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907022.1 (2769236..3403998, complement)

NW_024426885.1Genomic Context describing neighboring genes Neighboring gene glutamic-oxaloacetic transaminase 1 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 1 Neighboring gene 60S ribosomal protein L6-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC103675712 Neighboring gene HPS1 biogenesis of lysosomal organelles complex 3 subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive heparanase-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426885.1 Reference ASM1731132v1 Primary Assembly

    Range
    28719590..29353801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008704932.1 → XP_008703154.1  inactive heparanase-2

    UniProtKB/TrEMBL
    A0A384D8P3
    Conserved Domains (1) summary
    pfam03662
    Location:207 → 407
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
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Gene LinkOut

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