U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYNJ1 synaptojanin 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103673106, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSUMAG00000018419
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426552.1 (12165179..12259703)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907200.1 (22075099..22164251, complement)

NW_024426552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103673108 Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426552.1 Reference ASM1731132v1 Primary Assembly

    Range
    12165179..12259703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040621025.1 → XP_040476959.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A452V1J8, A0A8M1F828
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1054 → 1514
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)

  2. XM_040621021.1 → XP_040476955.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A452V1J8, A0A8M1F533
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1054 → 1409
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)

  3. XM_040621023.1 → XP_040476957.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A452V1J8, A0A8M1F533
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1054 → 1409
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)

  4. XM_040621024.1 → XP_040476958.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A452V1J8, A0A8M1F0L9
    Conserved Domains (4) summary
    cd09098
    Location:258 → 593
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:784 → 1139
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:2 → 213
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:592 → 733
    DUF1866; Domain of unknown function (DUF1866)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.