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GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [ Ursus maritimus (polar bear) ]

Gene ID: 103670247, updated on 11-Mar-2024

Summary

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Gene symbol
GBGT1
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
See related
Ensembl:ENSUMAG00000015836
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See GBGT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424119.1 (56752994..56761861, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907168.1 (41727..49772)

NW_024424119.1Genomic Context describing neighboring genes Neighboring gene carboxyl ester lipase Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene histo-blood group ABO system transferase Neighboring gene ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424119.1 Reference ASM1731132v1 Primary Assembly

    Range
    56752994..56761861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040632128.1 → XP_040488062.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A384CPX4, A0A8M1G0N1
    Conserved Domains (1) summary
    cl11394
    Location:75 → 301
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_040632127.1 → XP_040488061.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A384CPX4, A0A8M1FXG2
    Conserved Domains (1) summary
    cd02515
    Location:76 → 346
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens
Nucleotide Protein
Heading Accession and Version

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