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DGCR2 DiGeorge syndrome critical region gene 2 [ Ursus maritimus (polar bear) ]

Gene ID: 103669303, updated on 11-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
Ensembl:ENSUMAG00000004788
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024425897.1 (2555463..2644977, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907161.1 (2489283..2550515, complement)

NW_024425897.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 883-like Neighboring gene carbonic anhydrase 15-like Neighboring gene uncharacterized LOC121099914 Neighboring gene testis specific serine kinase 1B Neighboring gene testis specific serine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024425897.1 Reference ASM1731132v1 Primary Assembly

    Range
    2555463..2644977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040619570.1 → XP_040475504.1  integral membrane protein DGCR2/IDD

    UniProtKB/TrEMBL
    A0A452TDI1, A0A8M1F3H6
    Conserved Domains (3) summary
    cd03599
    Location:112 → 264
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
Heading Accession and Version

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