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DDX50 DExD-box helicase 50 [ Ursus maritimus (polar bear) ]

Gene ID: 103667775, updated on 11-Mar-2024

Summary

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Gene symbol
DDX50
Gene description
DExD-box helicase 50
See related
Ensembl:ENSUMAG00000007726
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DDX50 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426885.1 (55969778..56001691, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907148.1 (9439529..9471556)

NW_024426885.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene kinesin family binding protein Neighboring gene DExD-box helicase 21 Neighboring gene storkhead box 1 Neighboring gene U6 spliceosomal RNA Neighboring gene cell division cycle and apoptosis regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX50
Names
DEAD-box helicase 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426885.1 Reference ASM1731132v1 Primary Assembly

    Range
    55969778..56001691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008695961.2 → XP_008694183.1  ATP-dependent RNA helicase DDX50 isoform X2

    UniProtKB/TrEMBL
    A0A384CH49
    Related
    ENSUMAP00000010278.1
    Conserved Domains (2) summary
    COG0513
    Location:110 → 613
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:570 → 661
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins

  2. XM_040624425.1 → XP_040480359.1  ATP-dependent RNA helicase DDX50 isoform X1

    UniProtKB/TrEMBL
    A0A8M1FIA3
    Conserved Domains (3) summary
    COG0513
    Location:128 → 631
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:588 → 679
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:168 → 369
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

  3. XM_008695962.2 → XP_008694184.1  ATP-dependent RNA helicase DDX50 isoform X3

    UniProtKB/TrEMBL
    A0A384CI88
    Conserved Domains (2) summary
    COG0513
    Location:44 → 547
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:504 → 595
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
Nucleotide Protein
Heading Accession and Version

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