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DDX42 DEAD-box helicase 42 [ Ursus maritimus (polar bear) ]

Gene ID: 103665633, updated on 11-Mar-2024

Summary

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Gene symbol
DDX42
Gene description
DEAD-box helicase 42
See related
Ensembl:ENSUMAG00000017438
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DDX42 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424897.1 (14824584..14861186, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907134.1 (4165319..4189931)

NW_024424897.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 5 Neighboring gene FtsJ RNA 2'-O-methyltransferase 3 Neighboring gene coiled-coil domain containing 47 Neighboring gene STE20 related adaptor alpha Neighboring gene uncharacterized LOC121104973

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424897.1 Reference ASM1731132v1 Primary Assembly

    Range
    14824584..14861186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040640408.1 → XP_040496342.1  ATP-dependent RNA helicase DDX42 isoform X1

    UniProtKB/TrEMBL
    A0A384CAJ1, A0A8M1GMT6
    Conserved Domains (1) summary
    PTZ00110
    Location:193 → 652
    PTZ00110; helicase; Provisional

  2. XM_040640406.1 → XP_040496340.1  ATP-dependent RNA helicase DDX42 isoform X1

    UniProtKB/TrEMBL
    A0A384CAJ1, A0A8M1GMT6
    Conserved Domains (1) summary
    PTZ00110
    Location:193 → 652
    PTZ00110; helicase; Provisional

  3. XM_040640409.1 → XP_040496343.1  ATP-dependent RNA helicase DDX42 isoform X2

    UniProtKB/TrEMBL
    A0A384CAJ1, A0A8M1GKX5
    Conserved Domains (1) summary
    PTZ00110
    Location:30 → 489
    PTZ00110; helicase; Provisional
Nucleotide Protein
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