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DHX16 DEAH-box helicase 16 [ Ursus maritimus (polar bear) ]

Gene ID: 103665000, updated on 11-Mar-2024

Summary

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Gene symbol
DHX16
Gene description
DEAH-box helicase 16
See related
Ensembl:ENSUMAG00000019661
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DHX16 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024425564.1 (11776350..11791373)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907128.1 (17053074..17067996, complement)

NW_024425564.1Genomic Context describing neighboring genes Neighboring gene nurim Neighboring gene protein phosphatase 1 regulatory subunit 18 Neighboring gene chromosome unknown C6orf136 homolog Neighboring gene collagen alpha-1(I) chain-like Neighboring gene alpha tubulin acetyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024425564.1 Reference ASM1731132v1 Primary Assembly

    Range
    11776350..11791373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040644960.1 → XP_040500894.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2

    UniProtKB/TrEMBL
    A0A8M1H4Y0
    Conserved Domains (2) summary
    PTZ00121
    Location:211 → 446
    PTZ00121; MAEBL; Provisional
    COG1643
    Location:460 → 879
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_008692909.2 → XP_008691131.2  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

    UniProtKB/TrEMBL
    A0A384C8C1, A0A452V0U0
    Conserved Domains (2) summary
    PTZ00121
    Location:211 → 446
    PTZ00121; MAEBL; Provisional
    COG1643
    Location:460 → 1083
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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