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DDX4 DEAD-box helicase 4 [ Ursus maritimus (polar bear) ]

Gene ID: 103663673, updated on 11-Mar-2024

Summary

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Gene symbol
DDX4
Gene description
DEAD-box helicase 4
See related
Ensembl:ENSUMAG00000009291
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See DDX4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426663.1 (46219264..46292265, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907120.1 (16952627..17025411, complement)

NW_024426663.1Genomic Context describing neighboring genes Neighboring gene interleukin 6 cytokine family signal transducer Neighboring gene interleukin 31 receptor A Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene solute carrier family 38 member 9 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial-like Neighboring gene phospholipid phosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426663.1 Reference ASM1731132v1 Primary Assembly

    Range
    46219264..46292265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040622253.1 → XP_040478187.1  probable ATP-dependent RNA helicase DDX4

    UniProtKB/TrEMBL
    A0A452TVU1, A0A8M1F8K0
    Conserved Domains (2) summary
    cd18787
    Location:517 → 646
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18052
    Location:259 → 511
    DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
Nucleotide Protein
Heading Accession and Version

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