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SDHD succinate dehydrogenase complex subunit D [ Ursus maritimus (polar bear) ]

Gene ID: 103662381, updated on 26-Jun-2024

Summary

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Gene symbol
SDHD
Gene description
succinate dehydrogenase complex subunit D
See related
Ensembl:ENSUMAG00000006877
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SDHD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424008.1 (54765665..54878428, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907111.1 (10145600..10258543, complement)

NW_024424008.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103662380 Neighboring gene placenta expressed transcript 1 Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene testis expressed 12 Neighboring gene interleukin 18 Neighboring gene uncharacterized LOC121102929 Neighboring gene translocase of inner mitochondrial membrane 8 homolog B Neighboring gene NKAP domain containing 1 Neighboring gene PIH1 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquinone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial electron transport, succinate to ubiquinone IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424008.1 Reference ASM1731132v1 Primary Assembly

    Range
    54765665..54878428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008690064.2 → XP_008688286.1  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A384C090
    Related
    ENSUMAP00000009079.1
    Conserved Domains (1) summary
    pfam03055
    Location:99 → 601
    RPE65; Retinal pigment epithelial membrane protein

  2. XM_008690067.2 → XP_008688289.1  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A384C1I6
    Conserved Domains (1) summary
    pfam03055
    Location:38 → 540
    RPE65; Retinal pigment epithelial membrane protein

  3. XM_008690066.2 → XP_008688288.1  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A384C0B9
    Related
    ENSUMAP00000009083.1
    Conserved Domains (1) summary
    pfam03055
    Location:72 → 574
    RPE65; Retinal pigment epithelial membrane protein

  4. XM_008690069.2 → XP_008688291.1  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A384C094

  5. XM_008690068.2 → XP_008688290.1  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A384C1L0
    Conserved Domains (1) summary
    cd03496
    Location:60 → 158
    SQR_TypeC_CybS; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric ...
Nucleotide Protein
Heading Accession and Version

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