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IFIH1 interferon induced with helicase C domain 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103659509, updated on 11-Mar-2024

Summary

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Gene symbol
IFIH1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSUMAG00000012031
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See IFIH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423343.1 (67124780..67177293)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907079.1 (11725583..11778149, complement)

NW_024423343.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene grancalcin Neighboring gene fibroblast activation protein alpha Neighboring gene glucagon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423343.1 Reference ASM1731132v1 Primary Assembly

    Range
    67124780..67177293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008687031.2 → XP_008685253.1  interferon-induced helicase C domain-containing protein 1

    UniProtKB/TrEMBL
    A0A384BRN9, A0A452U6M8
    Related
    ENSUMAP00000016375.1
    Conserved Domains (6) summary
    smart00487
    Location:301 → 484
    DEXDc; DEAD-like helicases superfamily
    cd08818
    Location:8 → 99
    CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
    cd15807
    Location:891 → 1007
    MDA5_C; C-terminal domain of Melanoma differentiation-associated protein 5, a cytoplasmic viral RNA receptor
    cd12090
    Location:541 → 685
    MDA5_ID; Insert domain of MDA5
    pfam00271
    Location:697 → 814
    Helicase_C; Helicase conserved C-terminal domain
    cl14633
    Location:111 → 201
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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