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SMARCA5 SNF2 related chromatin remodeling ATPase 5 [ Ursus maritimus (polar bear) ]

Gene ID: 103658081, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCA5
Gene description
SNF2 related chromatin remodeling ATPase 5
See related
Ensembl:ENSUMAG00000015324
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SMARCA5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423453.1 (33434681..33473883)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907056.1 (4798024..4836604)

NW_024423453.1Genomic Context describing neighboring genes Neighboring gene GRB2 associated binding protein 1 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene FRAS1 related extracellular matrix 3 Neighboring gene U6 spliceosomal RNA Neighboring gene ethanolamine kinase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423453.1 Reference ASM1731132v1 Primary Assembly

    Range
    33434681..33473883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040626336.1 → XP_040482270.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

    UniProtKB/TrEMBL
    A0A384BNE6, A0A452UJ56
    Conserved Domains (1) summary
    PLN03142
    Location:69 → 1012
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  2. XM_008685567.2 → XP_008683789.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

    UniProtKB/TrEMBL
    A0A384BNE6, A0A452UJ56
    Conserved Domains (1) summary
    PLN03142
    Location:69 → 1012
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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