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LOC103643410 DNA-directed RNA polymerase I subunit 2 [ Zea mays ]

Gene ID: 103643410, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103643410
Gene description
DNA-directed RNA polymerase I subunit 2
Locus tag
ZEAMMB73_Zm00001d032587
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G388892
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Genomic context

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See LOC103643410 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (233240822..233264724)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (231348377..231372251)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112163616 Neighboring gene actin-like Neighboring gene uncharacterized LOC100284779 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene Succinate dehydrogenase subunit 3-2 mitochondrial Neighboring gene uncharacterized LOC103645342

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit 2
Names
DNA-directed RNA polymerase I subunit rpa2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    233240822..233264724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008666583.4 → XP_008664805.1  DNA-directed RNA polymerase I subunit 2

    UniProtKB/TrEMBL
    A0A1D6KRW8, A0A804LY41
    Conserved Domains (4) summary
    COG0085
    Location:23 → 1172
    RpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
    cd00653
    Location:24 → 1167
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:215 → 369
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:573 → 625
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain
Nucleotide Protein
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