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LOC103629733 exopolygalacturonase [ Zea mays ]

Gene ID: 103629733, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103629733
Gene description
exopolygalacturonase
Locus tag
ZEAMMB73_Zm00001d036823
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G320175; GRMZM2G454608
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Genomic context

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See LOC103629733 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (109310259..109311806, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (102272816..102274364, complement)

Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene exopolygalacturonase-like Neighboring gene exopolygalacturonase Neighboring gene exopolygalacturonase-like Neighboring gene exopolygalacturonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase
Names
Pectin lyase-like superfamily protein
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    109310259..109311806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008650851.3 → XP_008649073.1  exopolygalacturonase

    See identical proteins and their annotated locations for XP_008649073.1

    UniProtKB/Swiss-Prot
    P26216
    UniProtKB/TrEMBL
    A0A1Q1AZD7, A0A3L6D6B4, A0A3L6D788, A0A3L6E950, A0A3L6EAM3, A0A8U0WPI7
    Conserved Domains (1) summary
    cl19188
    Location:7 → 402
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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