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LOC103626518 GPI mannosyltransferase 3-like [ Zea mays ]

Gene ID: 103626518, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103626518
Gene description
GPI mannosyltransferase 3-like
Locus tag
ZEAMMB73_Zm00001d014973
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G164175
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Genomic context

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See LOC103626518 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (70764859..70776815)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (70715310..70727243)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100216629 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160 Neighboring gene Retrovirus-related Pol polyprotein LINE-1 Neighboring gene small nucleolar RNA R160 Neighboring gene small nucleolar RNA R160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 3-like
Names
Alg9-like mannosyltransferase family

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301468.1 → NP_001288397.1  GPI mannosyltransferase 3-like

    See identical proteins and their annotated locations for NP_001288397.1

    Status: PROVISIONAL

    Source sequence(s)
    BT066162
    UniProtKB/TrEMBL
    A0A804PDM3, C0PCZ3
    Conserved Domains (1) summary
    cl21590
    Location:2 → 544
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    70764859..70776815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020537549.2 → XP_020393138.1  GPI mannosyltransferase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A804PDM3, C0PCZ3
    Conserved Domains (1) summary
    cl21590
    Location:2 → 544
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_035958802.1 → XP_035814695.1  GPI mannosyltransferase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A804PDM3, C0PCZ3
    Conserved Domains (1) summary
    cl21590
    Location:2 → 544
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials